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Startup Taxes | Startup Tax Provider

A Guide to Startup Tax Planning by a Leading Startup Tax Provider and CPA Firm

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Dave Lowe, CPA
Dave Lowe, CPA
VP of Tax Services

Does Your Startup Need to File a Tax Return? 

First, let’s address one of the biggest questions founders have: If my startup didn’t earn any revenue, of if my company lost money, do I still need to file a tax return? Yes! Any startup that received an Employee Identification Number (EIN) must file a tax return.

Kruze is a leading startup tax provider, serving hundreds of VC and seed funded startups. Our clients have collectively saved over one hundred million in taxes through our R&D tax credit work, and our clients have been acquired by leading public technology companies like Apple, Workday, Cisco and others - proving that our tax and compliance work is of the highest standard. 

The next most common question we get is, can a founder DIY their tax work. In general, the answer is no. Here are some reason you should rely on a professional tax preparer that understands startups:

  • Preparing and submitting returns is time-consuming. It’s not as simple as filling out a form and mailing it to the IRS, and your time is limited. 
  • R&D expenses may not be fully deductible. Congress has passed legislation that can make even unprofitable startups that conduct a lot of R&D owe taxes. 
  • Mistakes can be expensive. You don’t need any startup tax compliance issues. You could end up with fees and penalties. More importantly, these types of problems can affect due diligence, which could affect your funding or any acquisition. 
  • Deductions and credits are available, even for unprofitable startups. One big example is the R&D tax credit. If you have employees and you’re doing qualified research and development, you may be able to reduce your payroll taxes! But you’ll need help to properly document your research activities.
  • Exits have heavy tax diligence. Kruze manages the tax due diligence for our clients. When major public technology companies purchase startups, tax diligence is no joke, and the acquiring company will require the founder to attest to pages and pages of tax and compliance standards - that’s where Kruze really shines. Our team of CPAs and IRS Enrolled Agents constitutes one of the largest groups of startup-focused tax providers on the planet. 
  • Businesses owe different taxes than people do. Depending on your startup’s structure and where you do business or have employees, you may have tax obligations in multiple states, including franchise taxes, sales taxes, income taxes, and payroll taxes
Tax Type Applicability Filing Requirements Common Rates/Range Potential Deductions/Credits Additional Notes
Federal Income Tax Paid when profits are generated, but even unprofitable startups must file returns Annual with estimated quarterly payments. Varies based on corporate structure. Business expenses, office supplies and furniture, R&D credits, etc. Net Operating Losses (NOL) can offset future profits.
State Income Tax Paid when profits are generated in states where startups have tax nexus. Even unprofitable startups must file returns. Annual with estimated quarterly payments. Varies by state. Varies by state. Check for special startup initiatives.
Sales Tax Paid on sale of certain goods/services. Varies by state or locality. Based on local nexus requirements. Varies by state/locality. Generally, no deductions. Compliance is crucial in states where the company has tax nexus.
Payroll Tax Paid by all startups with employees. Quarterly and annual. Fixed percentage for Social Security and Medicare. Unemployment tax varies by state. R&D credits. Includes federal and state taxes.
Delaware Franchise Tax Paid by startups registered in Delaware. Annual. Based on the corporation’s value. N/A Important for corporations registered in Delaware.
State Franchise Tax Paid by startups that do business in certain states. Annual. Varies by state. N/A Important in franchise tax states where corporations do business.
Other Taxes See additional taxes. Varies. Varies. Varies. N/A

Now that you know why professional preparation is important for startups, you can use our online tax return cost calculator to estimate how much your startup’s tax return would cost. Next we’ll look at the steps founders should follow to make sure your preparation goes smoothly.

STEP 2


What tax forms does your startup need to file?

Below you’ll find a list of tax forms that Delaware C-corporations may need. Please note that if your startup isn’t a C-corp, the IRS requires different forms. You may not need all of these forms; a qualified tax preparer like Kruze can guide you through this process. You can download a PDF of this list.

STEP 3


Is your startup eligible for R&D tax credits?

The research and development (R&D) tax credit is a government-sponsored incentive that encourages businesses to engage in R&D activities within the US. Startups can offset up to $500,000 in expenses starting in 2023. The credit can even benefit startups that are losing money – if you’ve got employees on your payroll, your company can use the R&D credits to reduce the amount of payroll taxes you pay. This is a great way to cut your burn rate.

Calculate your potential credit

These changes reduce the immediate value of the credit for many startups, but it still has value to help you save on payroll taxes and reduce your burn rate. To find out how much your R&D tax credit could be, you can use our credit calculator.

The process for claiming the tax credit is complex. Your R&D expenses must be considered qualifying by the IRS, and in 2022 the IRS launched new documentation requirements that will need to be met when you file your return. Our guide to the R&D tax credit walks you through the requirements and provides more information on qualified R&D expenses, and how you will receive your refund under the new amortization rules. 

In addition to the federal credit, some states also offer R&D credits. Check our state tax credit map to determine if your startup may be eligible for additional incentives.

STEP 4


What documents will your accounting firm need to complete your startup’s tax returns?

To make filing your startup taxes as smooth as possible, you’ll need to know what documents you need. Ideally, you should be assembling this information throughout the year, so you aren’t scrambling to produce it at the last minute. Here’s a downloadable checklist to help you get started. You may not need all of this information, or other documentation may be required based on your company’s industry and financial situation.

Corporate Information

Financial Documents

Prior Year Returns

  • All prior year’s returns, both federal and state
  • Any depreciation claimed in earlier years 
  • Net Operating Losses (NOL) from earlier years 
  • Any correspondence to or from the IRS or state tax authority, including any adjustments made to prior returns that could affect later returns 
  • Prior year overpayments
  • Estimated tax payments
  • Extension payments

STEP 5


Startup tax planning for next year

One task that frequently slips under the radar at startups is tax planning. Overlooking this fundamental business requirement can have serious consequences! In fact, a recent change to the tax code’s Section 174 illustrates how important tax planning can be to startups. In 2022, Section 174 changed the way that taxes are calculated by creating new capitalization and amortization rules for research and development expenses. 

Let’s look at a simple example. Prior to 2022, if a startup had $1 million in revenue and $2 million in expenses, it wouldn’t pay income taxes that year. But now startups have to amortize R&D expenses over five years. So if $1.5 million of the startup’s expenses were categorized as R&D, then the startup can only deduct $300,000 each year for five years ($1.5 million/5 years). Now the startup has a positive income of $200,000 ($1 million in revenue - $500,000 in allowable expenses - $300,000 of amortized R&D) and has a tax liability where it didn’t before!

Startup tax planning is not just a matter of compliance, but a strategic move that can significantly impact your long-term success. Here’s why you should plan, and not just react:

  • Create financial stability. Startup tax planning isn’t merely about adhering to regulatory requirements. It involves strategies to optimize the financial structure of a startup. By proactively planning for startup taxes, you can properly allocate your company’s financial resources, preserving funds for essential business operations and creating a stable financial foundation for future growth.
  • Maximize cost efficiencies. Early-stage companies usually operate within limited financial constraints, making cost efficiency a top priority. Effective startup tax planning allows your startup to identify and leverage potential tax benefits, incentives, and deductions, and then channel these savings into essential areas like research and development, talent acquisition, and marketing.
  • Minimize financial risks and liabilities. Without a comprehensive tax planning strategy, your startup could face various financial risks and liabilities. Errors and compliance issues can result in severe penalties and legal consequences, draining funds and slowing business growth. 
  • Improve investor confidence. A well-structured tax plan can significantly enhance investor confidence. A transparent and efficient tax strategy demonstrates the startup’s commitment to financial prudence and accountability, which can help attract new funding opportunities.
  • Facilitate long-term growth. Sustainable growth is the ultimate goal for any startup. A comprehensive tax planning framework aligns with the long-term vision of the business, facilitating strategic decision-making. The size and timing of purchases, planning for expenses (like R&D expenses), credit and deduction opportunities, and more can be factored into your business tax projections to help you pay the least amount to the IRS, states and other municipalities.

How to Select the Best Tax Services for Your Startup

VC-backed companies have very different tax services needs than traditional small businesses. Because VC-backed startups often lose money, they need to be more focused on staying compliant, saving the founders time so they can focus on building the business, and maximizing tax credits that work for unprofitable startups - and ignoring those that are really only for companies that make money. Here’s how to identify the best tax services for your startup’s unique needs.

Understand Your Tax Preparation Needs

Assess Complexity: The first step in choosing a tax service is to assess the complexity of your startup’s financial landscape. This includes evaluating revenue streams, funding rounds, R&D activities, and multistate operations. Additionally, if your startup plans to raise later-stage VC funding or aims to be acquired by a major public company in the next 5 to 10 years, the complexity increases significantly. These goals require meticulous tax preparation and due diligence to ensure that your financial records withstand the scrutiny of potential investors and acquirers.

Identify Services Offered: Look for tax services that offer a comprehensive suite of solutions, including tax preparation, compliance checks, R&D tax credit claims, strategic tax planning, and due diligence preparation. The ability to provide a one-stop solution for all your tax needs, especially in preparing for critical financial events like fundraising and acquisition, is a hallmark of a great tax service provider.

Evaluate Expertise in Startup Taxation

Specialization: Opt for a tax service that specializes in working with startups. A firm with a deep understanding of the startup ecosystem, including the intricacies of VC funding rounds and the acquisition process, will be more adept at identifying tax-saving opportunities and navigating the specific challenges startups face during tax preparation.

Proven Track Record: Seek out tax services with a proven track record of success with startups, particularly those that have successfully navigated later-stage funding rounds or acquisitions. Testimonials, case studies, and referrals from other startups can provide valuable insights into a firm’s capabilities and effectiveness in managing complex tax preparation and planning.

Technological expertise: Look for tax services that leverage the top automated accounting and fintech programs. By using the potential of advanced technologies like AI, CPAs with startup expertise can deliver services more effectively and efficiently, which saves your startup both money and time.

Consider the Approach to Tax Preparation

Proactive Planning: The best tax services for startups adopt a proactive approach to tax preparation. This involves not just preparing and filing your taxes but also planning ahead to minimize your tax liabilities and maximize potential credits and deductions. This proactive planning is particularly important for startups eyeing significant financial milestones like VC funding or acquisition.

Transparency and Communication: Effective communication is key to a successful partnership with your tax service provider. They should be transparent about their processes, keep you informed at every stage of tax preparation, and be readily available to answer any questions you may have, especially regarding due diligence and financial planning for major business events.

Assess the Cost

Transparent Pricing: Transparency in pricing is critical when choosing tax services. Understand the fee structure upfront to avoid any surprises. A reputable tax service will provide clear pricing based on the complexity of your tax situation and the services you require, including those related to preparing for VC funding or acquisition.

Over $25 million per year in startup payroll tax savings from R&D Tax Credits

Startups need expert startup tax providers – Kruze helps seed and VC funded companies creating novel technology save payroll expenses by taking advantage of R&D Tax Credits. Kruze is an expert at tax credits for startups. If your startup CPA isn’t talking to you about R&D Tax Credits, then you may be missing out on up to $500,000 in payroll tax savings next year!

FIND OUT IF R&D TAX CREDITS WORK FOR YOUR STARTUP

Our Tax Leader

Leading a team of pros that has completed over 1,000 startup tax returns!

Vanessa Kruze, Kruze Consulting Core Team

Vanessa Kruze, CPA

Founder & CEO

Vanessa Kruze, CPA, founded Kruze Consulting in 2012. Vanessa has helped over 800+ startups, prepared 1000+ startup tax returns, and oversees ~1 startup acquisition every month. She is generally considered one of the top tax accountants in Silicon Valley and represents funded companies in all major US tech hubs. Prior to founding Kruze Consulting, Kruze worked at Deloitte Tax and as the Controller of a startup with more than 120 employees.

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Best Tax Accountants Near Me

Kruze is a leading preparer of startup tax returns to startups near you. We serve all of the United States from our locations.

1515 7th Street #363 Santa Monica, CA 90401
75 East Santa Clara St San Jose, CA 95113
600 California St. 12th Floor San Francisco, CA 94108
145 W. 30th Street FL 7 New York, NY 10001
10900 Research Blvd Ste 160c-3024 Austin, TX 78759

Page Author - Leading Startup Tax Expert

Vanessa Kruze, CPA, is a leading expert in startup taxes and tax compliance. Her team at Kruze Consulting has filed thousands of tax returns for companies that have raised billions in VC funding, and her work has been diligenced by leading VCs, attorneys, and M&A teams at the largest technology companies.

Vanessa Kruze, a highly-experienced CPA, brings valuable tax expertise to startups, drawing from her rich background at Deloitte Tax and as a financial controller for a $20 million startup. As the leader of Kruze Consulting, recognized multiple times in the Inc 5000 list, she specializes in navigating the complex tax landscape for startups. Her firm is known for delivering precise and strategic tax solutions, delivering tax credits utilizing advanced tools to ensure compliance and optimize tax benefits for startups throughout the United States.

Notes: Starting prices are estimates, companies with unusual complexity, high transaction volumes or multi-state/international operations will result in additional fees (which will be discussed with the client prior to Kruze beginning the engagement); R&D Tax Credit analysis and preparation is not subject to the COST or timing estimate for a regular tax return.

Please contact us if you have questions.

Recent Kruze Blog Posts on Startup Taxation

Read our recent blog posts on startups and their taxes and compliance.

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About Us

A CPA Firm Specialized in Startup Accounting & Finance

A CPA Firm Specialized in Startup Accounting & Finance

Startups are our niche, and our passion. Our clients have raised over $15 billion in VC funding. We are one of only a few outsourced accounting firms that specialize in funded early-stage companies - we only offer financial and tax services to fast growing startups in the Pre-Seed, Seed, Series A, Series B and Series C stages.

The Right Accounting Partner for Your Startup’s Next Round

The Right Accounting Partner for Your Startup’s Next Round

We know how to de-risk your startup’s next venture capital round. Our team makes sure you are ready to fly through your next VC’s accounting, HR and tax due diligence. And when you use us as your bookkeeper, we set up and keep up-to-date a due diligence folder so you can get that next round of fundraising.

A Leader in Cloud Accounting Software

A Leader in Cloud Accounting Software

Our practice is built on best of breed cloud accounting software like QuickBooks, Netsuite, Gusto, Rippling, Taxbit, Avalara, Brex, Ramp and Deel. Technology makes us more efficient, saving our clients money and letting us offer higher value services like FP&A modeling, 409A valuation, and treasury advice. Startups deserve to work with CPAs using modern software.

Trusted by Top Venture Investors

Trusted by Top Venture Investors

Top angel investors and VCs refer Kruze because they trust us to give the right advice. Our clients are portfolio companies of top technology and Silicon Valley investors, including Y-Combinator, Kleiner, Sequoia, Khsola, Launch, Techstars and more. With us, your books and taxes are in order when it’s time to raise another round of venture financing.

What types of startups does Kruze Consulting usually work with?

What types of startups does Kruze Consulting usually work with?

Kruze Consulting works with funded Delaware C-Corps. Our clients have secured Pre-Seed to Series C or Series D funding. We look to partner with our clients, going beyond the typical outsourced accounting relationship and seeking to provide a higher level advisory role. We feel honored to be a part of making the world a better place, even if it’s one debit and credit at a time.

Accounting, Finance, Taxes, & Payroll all in one solution

Accounting, Finance, Taxes, & Payroll all in one solution

Startup CFO services, startup accounting and bookkeeping services, startup annual taxes, expense reports, payroll, state sales taxes: we've got you covered. Our software provides custom tailored dashboards that can be provided weekly or monthly, depending on your preference and plan. Founders are often so busy building their company that they don’t have time to take care of their finances. Traditionally, these companies have had to work with a basket of people to get their work done, including bookkeepers, accountants, AP clerks, CFOs, consultants, and tax accountants. At Kruze Consulting, our founders have one point person, saving time and money.

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